View Single Post
Old 03-20-2012, 12:36 AM   #2
louis7781x
Member
 
Location: Hong Kong

Join Date: Oct 2010
Posts: 74
Default

First,
It used discordant paired-end to find fusion candidates.
Example: |---geneA---|----------------------|---geneB---|

Second,
All unmapped reads from genome and exon-exon boundary will use megablast to align geneA and geneB to find exact break point span within geneA and geneB
louis7781x is offline   Reply With Quote