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Old 03-30-2012, 07:37 AM   #4
not just another member
Location: Belgium

Join Date: Aug 2010
Posts: 264


First annotate your reads : align them against mirbase databse (with blats per example) and then count for each miR, the number of reads.

After that in R create a matrix : each line represent one miR, each column a sample. Then use DESeq or edgeR for the DE analysis
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