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Old 05-01-2013, 01:37 PM   #1
pari_89
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Location: Newcastle upon Tyne

Join Date: Apr 2013
Posts: 55
Default Iontorrent denovo and reference assembler tools

Hi everyone, I am doing my master's thesis on evaluation of de-novo and reference guided assemblies.

I am using iontorrent fastq and sff files.

I have already got ray and mira in my list.

The other tools like velvet gives extremely short reads. Can you suggest with a series of other tools please that will provide a good assembly. SOApdenovo and ABYss are for shorter reads.

Could someone help me with the reference assemblies as well please?

Thank you.
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