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Old 11-07-2013, 12:34 AM   #2
Location: Oxford, UK

Join Date: Nov 2011
Posts: 17


The FPKM values for the genes are a sum of the FPKM values found for transcripts of that gene... so I guess you could expect differing values come from the difference in transcripts and the reads/fragments covering them.

To test I would look at the transcripts FPKM values for each gene that have the same loci.
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