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Old 01-08-2014, 05:27 AM   #3
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Location: US

Join Date: Aug 2011
Posts: 106

Thanks you for the reply, but unfortunately we are only doing this 1 sample, so I wouldn't be able to check with multiple samples. Also, we are using only unique mappings so I don't think that one of the mates could be at a repeat region.

I was thinking of trying another program such as breakdancer, but have been having trouble getting it to run.
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