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Old 01-13-2014, 06:14 PM   #2
Zapages
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Location: NJ

Join Date: Oct 2012
Posts: 97
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hmm maybe loading the files into NCBI IGV and seeing what matches up based on the chromosome location. The chromosome location are indicated.

Steps:

1) Load the your UCSC hg19 into NCBI IGV
2) Load your GTF files and BAM hits files to see the results.

I hope this helps a bit.
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