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Old 05-26-2015, 09:14 AM   #14
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Location: Eugene, OR

Join Date: May 2013
Posts: 521

Thanks for the info, nucacidhunter. I am curious about the QXT kmer plot, though. Looking at the base% plot, the bias is GC at the first 2 nucs then mildly T. How come there are no kmers with that at the start? I guess the kmers shown have some representation across the read. I like to compare kmers at the start to kmers selected from the middle of the read to see differences after normalizing the kmer content of the genome. Pretty interesting, though!
Providing nextRAD genotyping and PacBio sequencing services.
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