SEQanswers - View Single Post - How to extract the longest sequence from a fasta file

Brian Bushnell · 09-08-2017, 02:07 PM

You can make a read length histogram with BBMap's readlength.sh (or reformat.sh lhist), then run:

Code:

reformat.sh in=file.fa out=longest.fa minlength=X

09-08-2017, 02:07 PM	#2
Brian Bushnell Super Moderator Location: Walnut Creek, CA Join Date: Jan 2014 Posts: 2,707	You can make a read length histogram with BBMap's readlength.sh (or reformat.sh lhist), then run: Code: reformat.sh in=file.fa out=longest.fa minlength=X