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Old 02-02-2018, 07:57 AM   #2
Senior Member
Location: Québec, Canada

Join Date: Jul 2008
Posts: 260

This looks like contamination.

You are expecting a 1.65 Mb genome.

The sum of contig length is 2.4 Mb.

When you searched the low-coverage contigs against the NCBI database, did they have any hits or no hits ?

If they did have good hits, you could align all your contigs against that hit to make a list of everything that align to that hit.
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