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Old 10-05-2018, 06:13 AM   #1
DCseq
Junior Member
 
Location: Germany

Join Date: Jul 2017
Posts: 6
Default Script to make sequences equal length

Hi!
I would like to perform a motif analysis with my ChIP-Seq data on meme-suite.
The program requires me to put in sequences of equal length.
I have the nucleotide sequences from the regions where our protein of interest bound to in ChIP-Seq. These regions are of varying length.
I would like to make them of equal length by figuring out the sequence of greatest length and adding 'N's to both ends of the remaining sequences.
Anyone done this/has a R script?
Many thanks for your feedback in advance!
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