SEQanswers - View Single Post - GATK UnifiedGenotyper SNP calling with Agilent 50Mb target enrichment

nullalleles · 07-18-2011, 07:28 AM

The above code should have contained the argument "-L" for the interval list (bed) file and also a "-R" for the reference fasta file!

07-18-2011, 07:28 AM	#2
nullalleles Junior Member Location: Michigan Join Date: Jun 2011 Posts: 5	solved The above code should have contained the argument "-L" for the interval list (bed) file and also a "-R" for the reference fasta file!