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Old 08-16-2012, 02:02 PM   #5
ssully
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Location: NYC

Join Date: Aug 2010
Posts: 48
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Running this on a Windows command line, btw, so I wonder if the syntax would be different. I get "LINE was unexpected at the time" when I try to run that command on a file "'temp.txt" I created with lines that look like:

-entry DS113177 -range 1-10 -strand plus
-entry DS113177 -range 558-1093 -strand plus
-entry DS113177 -range 1415-3062 -strand plus

so I replaced tabs with commas and tried this on the command line

for /F "tokens=*,delims=," %G IN temp.txt DO blastdbcmd -db [mydb] %G %H

error is now
"temp.txt was unexpected at the time"

Last edited by ssully; 08-16-2012 at 02:23 PM.
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