Running this on a Windows command line, btw, so I wonder if the syntax would be different. I get "LINE was unexpected at the time" when I try to run that command on a file "'temp.txt" I created with lines that look like:
-entry DS113177 -range 1-10 -strand plus
-entry DS113177 -range 558-1093 -strand plus
-entry DS113177 -range 1415-3062 -strand plus
so I replaced tabs with commas and tried this on the command line
for /F "tokens=*,delims=," %G IN temp.txt DO blastdbcmd -db [mydb] %G %H
error is now
"temp.txt was unexpected at the time"
Last edited by ssully; 08-16-2012 at 02:23 PM.
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