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Old 01-11-2017, 09:53 AM   #2
Junior Member
Location: London

Join Date: Jan 2017
Posts: 4

Just in case anyone else has this problem, there is a pretty simple fix that worked for me (took me a while to find!!!!)

You can agglomerate taxa of the same type, so for me I did this:

(x1 <- tax_glom(qiimedata, taxrank="Family"))

ntaxa(qiimedata); ntaxa(x1)

qiimedata is my data matrix and then I can simply choose which rank to agglomerate to, then I run my DeSeq2 analysis as usual.
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