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Old 07-21-2019, 05:02 PM   #5
GenoMax
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Location: East Coast USA

Join Date: Feb 2008
Posts: 6,990
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You can certainly use Brian's recommendation above. If you wish to find out how many reads actually map to those individual references (e.g. rRNA, mito etc) then using bbsplit.sh would be useful since it will give you that statistics.
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