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Old 04-05-2014, 10:54 AM   #8
Zapages
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Location: NJ

Join Date: Oct 2012
Posts: 97
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I was able to run Gfold without any problems. The first step is to install GSL and then install Gfold


first extract the GSL file in terminal:

Code:
-xzf gsl-VERSION.tar.gz
go into the GSL folder:

Code:
./configure
make
sudo make install
Then extract the gfold files and run the following code:

Code:
g++ -O3 -Wall -lgsl -lgslcblas -g main.cc -o gfold
To run Gfold via terminal in OSX, you'll need to provide the file path to gfold and go from there:

Code:
 /User/File/path/gfold1.1.1/gfold
I hope this helps Parharn.

Source:

http://www.brianomeara.info/tutorials/brownie/gsl
http://forums.appleinsider.com/t/868...sl-for-dummies
https://bitbucket.org/feeldead/gfold/

http://compbio.tongji.edu.cn/~fengjx/GFOLD/gfold.html

EDIT: The Tool is now available on iPlant Collaborative for no replicates RNA-Seq reads data set:

Gfold 1.1.1 Counts: https://pods.iplantcollaborative.org...ld+1.1.1+Count

Gfold 1.1.1 DE: https://pods.iplantcollaborative.org...nce+Expression

Last edited by Zapages; 04-21-2014 at 04:43 PM.
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