Hi,
I ran solid2fastq from bfast+bwa and from bfast.
the stats are different for a sample i.e. entirely different:
/usr/local/bfast+bwa/bin/solid2fastq -o khan03_20101013_PE_NB1001WGA_E /home/rajehh/mapping/data/DW/khan03_20101013_PE/khan03_20101013_PE_NB1001WGA_E_F*.csfasta /home/rajehh/mapping/data/DW/khan03_20101013_PE/khan03_20101013_PE_NB1001WGA_E_F*.qual
Outputting, currently on:
105443471
Found
number_of_ends number_of_reads
1 105301151
2 142320
[rajehh@biowulf test]$ /usr/local/bfast/bin/solid2fastq -o NB1001WGA_E /home/rajehh/mapping/data/DW/khan03_20101013_PE/khan03_20101013_PE_NB1001WGA_E_F*.csfasta /home/rajehh/mapping/data/DW/khan03_20101013_PE/khan03_20101013_PE_NB1001WGA_E_F*.qual
Outputting, currently on:
105443471
Found
number_of_ends number_of_reads
1 0
2 105443471
Any Idea why the two converters do not give the same result ?
Thanks.
I ran solid2fastq from bfast+bwa and from bfast.
the stats are different for a sample i.e. entirely different:
/usr/local/bfast+bwa/bin/solid2fastq -o khan03_20101013_PE_NB1001WGA_E /home/rajehh/mapping/data/DW/khan03_20101013_PE/khan03_20101013_PE_NB1001WGA_E_F*.csfasta /home/rajehh/mapping/data/DW/khan03_20101013_PE/khan03_20101013_PE_NB1001WGA_E_F*.qual
Outputting, currently on:
105443471
Found
number_of_ends number_of_reads
1 105301151
2 142320
[rajehh@biowulf test]$ /usr/local/bfast/bin/solid2fastq -o NB1001WGA_E /home/rajehh/mapping/data/DW/khan03_20101013_PE/khan03_20101013_PE_NB1001WGA_E_F*.csfasta /home/rajehh/mapping/data/DW/khan03_20101013_PE/khan03_20101013_PE_NB1001WGA_E_F*.qual
Outputting, currently on:
105443471
Found
number_of_ends number_of_reads
1 0
2 105443471
Any Idea why the two converters do not give the same result ?
Thanks.
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