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Old 10-21-2016, 04:21 PM   #1
Kogan
Junior Member
 
Location: Moscow

Join Date: Oct 2016
Posts: 1
Default Searching for specific sequences in WGS data

Hi everyone.

I have never worked with WGS data and have a question. I have several thousands of sequences that I can convert in any format (e.g. fasta file) and I want to know whether each of the sequences in presented in my genome. Just 'yes' or 'no' for each sequence and, if it is possible, number of repeats for each sequence if it is presented in genome (e.g. presented twice or three times). I have both fastq and bam files. It is human genome.

I went through several presentations, but would be grateful if someone who has an experience in WGS data could suggest me the procedure/pipeline.

Thanks!
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