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Old 05-07-2012, 05:31 AM   #3
qwsqe
Junior Member
 
Location: usa

Join Date: Jun 2010
Posts: 4
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Thanks, arvid.
To what extend, Bowtie sets the FLAG to 0x4 for a read, and make the CIGAR field "not abailable". What are the measure and threshold bowtie uses for setting this?

Thanks
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