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Old 10-08-2013, 05:48 AM   #2
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Location: sub-surface moon base

Join Date: Apr 2013
Posts: 372

I'm confused. Your question implies that you have a WGS metagenome but then you use the word amplicon. Anyway, maybe you could do a reference guided assembly using your favorite gene as a reference? Alternative you could map your reads against a representative set of your favorite gene and then assemble those reads? There are so many ways to do this..

Last edited by rhinoceros; 10-08-2013 at 05:51 AM.
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