Quote:
Originally Posted by maubp
What kind of stats? If you just want the top hit, you can tell BLAST to only give you one hit per query.
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The kind of summary stats I am aiming for or rather looking to extract is kinda similar of what is outputted by blast2go, ie in terms of top hit species and species distribution.
So, I was wondering if there is any other program out there that I can feed the BlastN results to get the stats. Or if anyone has a script to share that I can use to manipulate the data and extract such results.