View Single Post
Old 09-08-2014, 12:34 PM   #2
Brian Bushnell
Super Moderator
 
Location: Walnut Creek, CA

Join Date: Jan 2014
Posts: 2,707
Default

Use the redirect operator ">" to pipe to a file:

bwa mem -t 20 50Gb_index ../../NZ_bowtie_nonaligned_hungate_thread.done.gz > mapped.sam
Brian Bushnell is offline   Reply With Quote