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Old 06-08-2017, 03:04 AM   #6
mido1951
Senior Member
 
Location: Tunisia

Join Date: May 2014
Posts: 123
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thank you for your response.
Can you explain me this output please.

Average coverage: 25,49
Standard deviation: 6,38
Percent scaffolds with any coverage: 100,00
Percent of reference bases covered: 99,85


and in covstats.txt:

Code:
#ID	Avg_fold	Length	Ref_GC	Covered_percent	Covered_bases	Plus_reads	Minus_reads	Read_GC	Median_fold	Std_Dev
gi|556503834|ref|NC_000913.3| Escherichia coli str. K-12 substr. MG1655, complete genome	26,6251	4641652	0,5079	99,8479	4634590	123276	118657	0,5042	26	6,38
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