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Old 06-12-2017, 09:29 AM   #16
Brian Bushnell
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Location: Walnut Creek, CA

Join Date: Jan 2014
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Quote:
Originally Posted by mido1951 View Post
Sorry but i had juste ~27000 reads not 2365043??
thank your for your response.
Oh - I see the confusion. BBMap is not capable of mapping unlimited-length reads. It can only map reads up to 600bp. mapPacBio.sh is a version of BBMap that supports longer reads, up to 6000bp. Reads longer than that will be shredded into shorter pieces which are mapped and tracked individually. So it's not ideal for long read platforms for Nanopore when you need full-length alignments.
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