View Single Post
Old 11-19-2010, 08:25 AM   #2
nilshomer
Nils Homer
 
nilshomer's Avatar
 
Location: Boston, MA, USA

Join Date: Nov 2008
Posts: 1,285
Default

BWA does not consider quality scores so you need to convert the quality scores in the SAM/BAM file to sanger before variant calling.
nilshomer is offline   Reply With Quote