SEQanswers - View Single Post - comparing results from two different reference genomes

bioinfosm · 02-24-2009, 08:38 AM

Ohh, so thats changed in 1.3
Yes this was the case as Illumina updated its quality values based on Gerald alignments. If you check the quality values in Bustard folder, they should match irrespective of reference

02-24-2009, 08:38 AM	#3
bioinfosm Senior Member Location: USA Join Date: Jan 2008 Posts: 482	Ohh, so thats changed in 1.3 Yes this was the case as Illumina updated its quality values based on Gerald alignments. If you check the quality values in Bustard folder, they should match irrespective of reference