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Old 02-24-2009, 08:38 AM   #3
bioinfosm
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Location: USA

Join Date: Jan 2008
Posts: 482
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Ohh, so thats changed in 1.3
Yes this was the case as Illumina updated its quality values based on Gerald alignments. If you check the quality values in Bustard folder, they should match irrespective of reference
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