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Old 03-16-2011, 01:15 AM   #4
Jose Blanca
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Location: Valencia, Spain

Join Date: Aug 2009
Posts: 70
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We usually merge bam files for GATK. Our code is exposed in a pipeline (http://bioinf.comav.upv.es/ngs_backbone/), but if you like python you could use the underlying library (https://github.com/JoseBlanca/franklin).

Regards.
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