SEQanswers - View Single Post - A heretically simple approach to variant calling

Hena · 12-21-2011, 03:58 AM

You can ask samtools mpileup to print out the nucleotide pileups for each position in bam file. Parsing that should be fairly simple with a script.

12-21-2011, 03:58 AM	#2
Hena Member Location: Finland Join Date: Nov 2009 Posts: 19	You can ask samtools mpileup to print out the nucleotide pileups for each position in bam file. Parsing that should be fairly simple with a script.