SEQanswers - View Single Post - How to deal with no calls from GATK Unifiedgenotyper for indels

ulz_peter · 01-30-2012, 11:43 PM

I once tried to twaek GATK to output Indels in 454 data, but I think they turned that utility off as soon as you specify the PL:454 (or maybe it was PL:ROCHE, I don't remember) tag. In case you find a solution, I'd be happy to it

01-30-2012, 11:43 PM	#2
ulz_peter Senior Member Location: Graz, Austria Join Date: Feb 2010 Posts: 219	I once tried to twaek GATK to output Indels in 454 data, but I think they turned that utility off as soon as you specify the PL:454 (or maybe it was PL:ROCHE, I don't remember) tag. In case you find a solution, I'd be happy to it