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Old 08-22-2013, 04:41 AM   #4
hugh_hang
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Location: Hangzhou, China

Join Date: Jan 2013
Posts: 28
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Quote:
Originally Posted by francesco.vezzi View Post
MIRA3 is probably what you need...
Remember that SOAPdenovo gives as output a file named *.scafSeq that contains the scaffolds (from my experience the contig file contains a lot of very short and repetitive contigs often shorter than the read length!!!)

Another solution is to give the output of the two assemblers as input for a "standard" assembler like PCAP or ARACHNE...

Anyway I think that you resources are really too low...
if my data is 454 sequencing data from cDNA, is it necessary to generate scaffolds? OR can the scaffolds make any sense?
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