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Old 08-08-2016, 09:03 AM   #2
Magdoll
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Location: Bay Area

Join Date: Aug 2011
Posts: 30
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Hi,

Short answer is yes. There are multiple ways to hack tofu_wrap.py -- will require additional monitoring of the parallel jobs. But I first need to ask what parameters did you use to call tofu_wrap.py? What are the size bins (aka what are the subdirectories in clusterOut/)? Do you have an SGE cluster? Do you have multiple nodes from which you can run parallel pbtranscript.py cluster jobs?

Also, please consider joining the Iso-Seq google group: https://groups.google.com/forum/#!forum/smrt_isoseq

Since tofu_wrap.py is on the cutting edge (it's not officially supported in SMRTAnalysis 2.x but is on the agenda for SMRTAnalysis 3.x), the google group is better suited

--Liz
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