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Old 08-23-2010, 01:49 AM   #3
francesco.vezzi
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Location: Udine (Italy)

Join Date: Jan 2009
Posts: 50
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MIRA3 is probably what you need...
Remember that SOAPdenovo gives as output a file named *.scafSeq that contains the scaffolds (from my experience the contig file contains a lot of very short and repetitive contigs often shorter than the read length!!!)

Another solution is to give the output of the two assemblers as input for a "standard" assembler like PCAP or ARACHNE...

Anyway I think that you resources are really too low...
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