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Old 08-29-2011, 08:15 PM   #3
Location: Tokyo, Japan

Join Date: May 2010
Posts: 27

Thanks vebaev,
Do you use Deseq for miRNA expression analysis?
One of my concern is the number of miRNA I have in my list is small, 300 ~ 800, depending on a category.
Can I assume that most of miRNA does not change expression levels as we do in mRNA expression analysis?
I think Deseq is good for gene expression analysis, ie. most of genes in some thousands of transcripts do not show expression changes. But I'm not sure miRNA expression analysis adopt this hypothesis.

Last edited by kenosaki; 08-29-2011 at 08:20 PM.
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