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Old 09-26-2012, 01:44 PM   #3
Elsie
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Location: Australia

Join Date: Mar 2011
Posts: 85
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Hi fkrueger,
thanks for the reply.
100bp reads, paired-end, default bismark + trim galore other than specifying paired-ends and I used the default directional.
Sequence pairs with no alignments under any condition: 13154097
Sequence pairs did not map uniquely: 871370
Maybe this is as good as it gets? First time with NGS data so I don't have any feeling yet for good/bad data.
thanks.
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