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  • spike1985
    Junior Member
    • Feb 2012
    • 6
    #1

    cut fasta

    Hi most knowledgeable people.

    I've got a simple dilema but im too new to this to be able to work it out. A recent windows to linux convert.
    I have a fasta sequence with one sequence (very long) in it and i would like to cut out a range into a smaller file.

    >sequence1
    ACGAGATAGCGATTTGATCGATGCGCTAGC........etc

    how would i cut out base pairs 300000 to 500000?

    Help.
    Tags: fasta sequence cut
    • spike1985
      Junior Member
      • Feb 2012
      • 6
      #2
      Its ok ive solved my own problem
      Biopython SeqIO.write after chosing the range [xx:xx]
      Easy. Can delete this now.

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