Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • efoss
    Member
    • Jul 2011
    • 98

    #1

    converting UCSC gene names to Hugo Symbol names

    I am having a lot of trouble with getting the UCSC gene names converted to more normal names - like Hugo Symbol names. I have the kgAlias.txt file, but that file seems to match up UCSC names to quite a few other names, many of which are no more biologically meaningful than the original UCSC name. Can I download a file that is just like the knownGene.txt file (having gene name, chromosome, strand, transcription start, transcription stop, coding sequence start, coding sequence stop, number of exons, exon starts, exon stops, etc.) except where the gene name is a Hugo Symbol gene name?

    Thank you.

    Eric
  • kwatts59
    Member
    • Apr 2011
    • 46

    #2
    Try this site
    http://genecards.weizmann.ac.il/genetide-bin/tide.cgi

    Comment

    • efoss
      Member
      • Jul 2011
      • 98

      #3
      Thanks. I'll look into that site.

      Comment

      Latest Articles

      Collapse

      • SEQadmin2
        Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t
        by SEQadmin2



        Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

        Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating
        ...
        10-14-2026, 09:55 AM
      • SEQadmin2
        New Genomics Technologies Take Aim at Long-Standing Limits
        by SEQadmin2


        Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.

        We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing
        ...
        09-28-2026, 10:25 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by SEQadmin2, 10-15-2026, 10:52 AM
      0 responses
      24 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 10-14-2026, 05:39 AM
      0 responses
      30 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 10-13-2026, 09:56 AM
      0 responses
      26 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 10-09-2026, 11:14 AM
      0 responses
      28 views
      0 reactions
      Last Post SEQadmin2  
      Working...