De novo transcriptome assemblers for Illumina Mi-Seq data

[mruizm]

Hi everyone, i'm glad to be part of this comunity.

I'm new in the world of analyze de novo transcriptome data, in the lab we have an Illumina Mi-Seq sequencer and i would like to ask you, what de novo assemblers of transcriptome do you know? hopefully free-software.

regards!

[mastal]

the main ones are Oases and Trinity

[jgibbons1]

I would echo mastal's recommendations and also add SOAPdenovo-Trans (http://soap.genomics.org.cn/SOAPdenovo-Trans.html)

[JackieBadger]

Mira also works for Illumina

[mruizm]

Thanks everyone!