EBARDenovo - A new RNA-seq do novo assembler for paired-end Illumina data

htchu.taiwan

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Join Date: Dec 2011

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EBARDenovo - A new RNA-seq do novo assembler for paired-end Illumina data

01-18-2012, 07:04 AM

Hi,

I wrote a program for de novo assembly of paired-end RNA-seq data.

It's a 64-bits Windows command with .Net framework http://msdn.microsoft.com/en-us/library/w0x726c2.aspx.

You can try it on a Windows-7 PC with 16G RAM for the assembly of single run Illumina transcriptomic data (20G, 90bp~100bp paired-end reads).

EBARDenovo is designed for finding lower-expressed transcripts even their coverage depths are very low (even less than 2x).

The download link:

EBARDenovo

https://sourceforge.net/projects/ebardenovo

Download EBARDenovo for free. Highly-accurate de novo assembler of paired-end RNA-Seq. A highly-accurate search-based de novo assembler of paired-end RNA-Seq for advance transcriptomic study.

I wish you can obtained fine results by my EBARDenovo program.

Best regards,

I am Hsueh-Ting Chu from Taiwan. [email protected]
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haojam

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Join Date: Jun 2010

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05-22-2013, 11:22 PM

Dear Hsueh-Ting Chu from Taiwan

Good to know about your EBARDenovo. Does it support for transcriptome data generated from other platforms like ion torrent other than Illumina.

Rocky
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manoharan1988

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Join Date: May 2013

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06-10-2013, 12:13 AM

Hi Hsueh-Ting Chu,

Could you please give me some Idea on working with denovo bacterial transcriptome data to find the expression level.

Regards,
Manoharan
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