Help with bisulfite sequencing

[aniruddha.otago]

Hi,
We are daling bisulphite sequencing and have send DNA samples now for sequencing to illumina/solexa. can any one tell me how can i deal with the data after sequencing. my study is on DNA methylation. what may be the starting point. because i really dont know anything about it. can anyone help.
aniruddha.otago@gmail.com. please...

[simonandrews]

Originally Posted by aniruddha.otago

Hi,
We are daling bisulphite sequencing and have send DNA samples now for sequencing to illumina/solexa. can any one tell me how can i deal with the data after sequencing. my study is on DNA methylation. what may be the starting point. because i really dont know anything about it. can anyone help.
aniruddha.otago@gmail.com. please...

You'd probably be better putting this in a new thread rather than adding it to the end of this one.

There have been a couple of threads already about this if you search back through old posts but it might be worth going through it again.