Unconfigured Ad

Collapse
X
 
  • Filter
  • Time
  • Show
Clear All
new posts
  • bsp022
    Junior Member
    • Mar 2013
    • 2

    Free alternative to KEGG

    Hi, I'm trying to do some functional analysis on a metagenomic dataset and I'd like to be able to assign my hits to pathways/modules. All the papers I've seen have used KEGG for this step, but it's no longer free (unfortunately I don't have £2000 to spare!), and most of the suggested alternatives in other threads seem to be specific to model organisms.

    Can anyone recommend a database of pathways suitable for use with metagenomic gene annotations?
  • GenoMax
    Senior Member
    • Feb 2008
    • 7142

    #2
    Try: http://www.microme.eu/

    Comment

    • yzzhang
      Member
      • Jan 2013
      • 67

      #3
      for metagenome functional analysis, you can try FOAM http://portal.nersc.gov/project/m1317/FOAM/

      Comment

      Latest Articles

      Collapse

      • GATTACAT
        Reply to Nine Things a Sample Prep Scientist Thinks About Before Sequencing
        by GATTACAT
        Love this - good data definitely starts from good input, and poor input can only give relatively poor data. I particularly like the mention of Nanodrop/absorbance based methods for quantification. It's such a toss up if you'll get an accurate reading or what amounts to a randomly generated number, and a lot of library/sequencing related issues can be traced back to poor quant.
        07-01-2026, 11:43 AM
      • SEQadmin2
        Nine Things a Sample Prep Scientist Thinks About Before Sequencing
        by SEQadmin2


        I’m not a sequencing expert. I’m a purification scientist who uses NGS to evaluate workflows my group develops. With this perspective, we think about the sample first and the NGS workflow second. The sequencer is an exceptionally honest reporter, but it can only report on what you give it, so whether you get clean, interpretable data from an NGS workflow is largely determined before you begin.

        Here are nine questions we think about, in roughly the order they matter, before...
        06-18-2026, 07:11 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by SEQadmin2, 07-02-2026, 11:08 AM
      0 responses
      16 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 06-30-2026, 05:37 AM
      0 responses
      17 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 06-26-2026, 11:10 AM
      0 responses
      20 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 06-17-2026, 06:09 AM
      0 responses
      54 views
      0 reactions
      Last Post SEQadmin2  
      Working...