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  • bioinfosm
    Senior Member
    • Jan 2008
    • 483

    SNP calling on 454 data

    Anyone has ideas on how to make variation calls on 454 re-sequencing data?

    perhaps using the Alldiffs or HCDiffs files from gsmapper software? or some other tools. I believe there needs to be some downstream analysis after Marth lab's mosaik tool, in order to get variation positions and % calls for A C G Ts
    --
    bioinfosm

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