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  • joa_ds
    Member
    • Dec 2008
    • 52

    #16
    i feel stupid now...

    but thx for the hint

    Comment

    • lh3
      Senior Member
      • Feb 2008
      • 686

      #17
      divsufsort is the fastest algorithm to build BWT index, but as indexing the reference genome is an once-for-all procedure, using a slower algorithm such as "is" is acceptable. To reduce the dependency of code, I dropped the divsufsort support. Sorry for the confusion.

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