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  • __sequence
    Member
    • Jun 2011
    • 13

    Algebraic operations with genomic occupancy data

    Hi all,

    What is a proper software to calculate the average between several genomic coverage signals (e.g. several ChIP-seq replicates, with single base-pair resolution)?

    Thanks!
    Last edited by __sequence; 11-24-2017, 07:37 PM.
  • malcook
    Member
    • Sep 2009
    • 24

    #2
    wiggletools - you will probably want your bigwigs to be normalized, possibly as made easy with deepTools
    Last edited by malcook; 11-25-2017, 12:06 AM.

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    • __sequence
      Member
      • Jun 2011
      • 13

      #3
      Originally posted by malcook View Post
      wiggletools - you will probably want your bigwigs to be normalized, possibly as made easy with deepTools
      Thank you! Is there also a software that allows to perform such operations with BedGraph files?

      Comment

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