Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
Deprecated gene IDs, HELP!!! emolinari RNA Sequencing 0 08-26-2016 06:50 AM
Stringtie is breaking up an annotated gene iriet RNA Sequencing 0 04-08-2016 11:52 AM
converting mirDB target ids to ensembl ids bioBob Bioinformatics 2 03-23-2015 03:46 AM
Problem in Mapping UCSC isoforms IDs to RefSeq IDs. watermark Bioinformatics 0 06-06-2014 01:15 PM

Thread Tools
Old 12-06-2017, 11:48 PM   #1
Junior Member
Location: india

Join Date: Jan 2017
Posts: 2
Default Issue with StringTie--not picking up reference gene IDs

Hello, I am using StringTie for RNA-seq analysis and want to use DESeq for differential gene expression analysis.

After running the command for creating ballgown input files, I used to extract the gene_count matrix. It is not picking up most of the gene annotations and using default StringTie IDs. Is there a way to work around the problem ?

sanchari24 is offline   Reply With Quote

rna-seq analysis, stringtie

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 09:11 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2018, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO