Augustus with RNA-Seq

[osvaldoreis]

Hey guys, I'm new with bioinformatics and I'm currently working with gene prediction. I would like to know if has someone here that ever use Augustus with RNA-Seq and if got a good result? I already ran, but my results don't seen to be good.

Ty

[steven]

Hey guys, I'm new with bioinformatics and I'm currently working with gene prediction. I would like to know if has someone here that ever use Augustus with RNA-Seq and if got a good result? I already ran, but my results don't seen to be good.

Ty

Maybe try geneid instead, i know they worked on a specific NGS version for the RGASP project.
Also, you can check out Cufflinks for instance, or Scripture.