Remove redundancy from 454 data

[sklages]

Hi all,

in order to remove redundancy from a 454 EST dataset, I was wondering if there already is a tool, which removes sequences which are prefixes of other sequences, just as Celera's 'sffToCA' does, before I'd go for denovo assembly. I (sometimes) have enormous coverages ..

Any idea?

thx,
Sven

[tsa]

Your are looking for cdhit-454 from http://weizhong-lab.ucsd.edu/cdhit_4...d=Introduction

[sklages]

yes! That's it.

thanks,
Sven