A list of available sequence annotation tools?

[Stegger]

Hi, in reply to a thread here: http://seqanswers.com/forums/showthread.php?t=819 I think it would be great to share tools for annotation of assembled genomes. I have a particular interest in bacteria, but why not make a list of all available tools.

For bacteria I have tried the Manatee annotation service at JCVI:

http://www.jcvi.org/cms/research/projects/annotation-service/overview/

Another tool which I do not have much experience with is The SEED:

http://www.theseed.org/wiki/Main_Page

Suggestion from RudyS: http://www.blast2go.org/

I would greatly appreciate all the links you can provide!

[Joann]

new! International Society for Biocuration

For rapidly evolving, up to date focus on genome sequence annotation and comparative genomics, check out the 3rd International Biocuration Conference at

http://projects.eml.org/sdbv/events/BiocurationMeeting/index.html

and do not hesitate to bring forward questions, ideas, suggestions and collaborative projects for all kinds of database annotation strategies.

[biblio]

For rapidly evolving, up to date focus on genome sequence annotation and comparative genomics, check out the 3rd International Biocuration Conference at

http://projects.eml.org/sdbv/events/BiocurationMeeting/index.html

and do not hesitate to bring forward questions, ideas, suggestions and collaborative projects for all kinds of database annotation strategies.

very useful Information for me
thanks

[dsenalik]

A new tool released recently ~March 2012 is Mitofy http://dogma.ccbb.utexas.edu/mitofy/ for annotation of plant mitochondrial genomes.
And of course the corresponding tool for plastid genomes that has been available for a while is Dogma http://dogma.ccbb.utexas.edu/