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No problem, good luck with your further analysis.
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bowtie-build error
Hi boetsie,Originally posted by boetsie View Post
SSPACE must be very useful tool for scaffolding. But when I tried to use it, the process was failed by bowtie-build step. I only have contig file contains all name with super_contig sequences without other information and there are lots of 'N' gaps between. Do I need to modify some information and get bowtie-build works? If not, what's the problem?
The reads I have are 100PE
so the library is like
lib1 ***1.fastq ***2.fastq 200 0.7 0
or I should replace 200 to 400?Comment
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