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|02-07-2012, 12:14 PM||#1|
Location: united states
Join Date: Feb 2012
s_#_sorted.txt to BED
I am trying to convert the following type of code into bed format or really anything that I can view in IGV or IGB browsers. I think it is in eland sorted format, but not too sure.
HWI-EAS240 FC2087UAAXX 3 257 951 322 TGTTGTCTCTCTTCTGGGTCTAGCCACCTAGCAAGT [[[[[[[[[[[[[[[ZZU[[[[U[[Z[[X[VSSOVS chr10.fasta 53590 R 33G2 0
I looked around and found that I might be able to use SAMTOOLS or FINDPEAKS. This is probably a simple conversion, but I'm not too familiar with the implementation of these programs so I'd really appreciate any help.
Thanks in advance!
|bed, conversion, eland sorted, sorted.txt|