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Old 04-27-2012, 02:34 PM   #1
cascoamarillo
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Default Map visualization of all the chromosomes

Hi guys,

Sorry to ask about this, but months ago there was a post when people mentioned a genome browser that can be able to show the coverage of all the chromosomes in a single picture from a mapping report. I don't remember the name of the program and I've tried to google it and search the threat into the forum without any success. I've also been looking one by one the properties of general genome browsers:
http://seqanswers.com/wiki/Special:B...=Visualization
but I'm not able to find this option.

Thanks.
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Old 04-28-2012, 02:13 AM   #2
mudshark
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IGB (integrated genome browser)and IGV (integrative genomics viewer) have a whole genome view.
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Old 05-21-2012, 02:24 PM   #3
apadr007
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is there a program that has whole genome view of mapped read coverage? I know in IGV you can view only transcript abundance
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Old 05-22-2012, 12:17 AM   #4
mudshark
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Quote:
Originally Posted by apadr007 View Post
is there a program that has whole genome view of mapped read coverage? I know in IGV you can view only transcript abundance
if you can provide an appropriate file format, e.g. wig, you can visualize the entire genome (at least in IGB)
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