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A wonderful work!!!
thank you
thank you
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Where can I find the results that Nix suggested earlier, same sample sequences tested with different peak finding software?Napoleon Bonaparte: "Money, money, money!", bioinformatician: "Format, format, format, ..."Comment
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Here's the thread to the ChIP Seq Challenge http://seqanswers.com/forums/showthread.php?t=1039Comment
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Hi All,
We recently completed first chip-seq run in our laboratory. We could find a few good peaks with MACS. What I want to do is find the distribution of the distances of all the genes that are closes to the peaks on their respective 5' and 3' end. Is there a simple way to do it. Naturally I have the genomic coordinates. If anybody has done this before, it will help most helpful else I will try to write a tool to get it done.
regardsSameet Mehta (Ph.D.),
Visiting Fellow,
National Cancer Insitute,
Bethesda,
US.Comment
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You might want to check out the following tool, which has a built in "nearest gene finder". http://havoc.genomecenter.ucdavis.ed...in/chipseq.cgi
Cheers,
LizzyComment
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Thank you Lizzy, I think this will solve my problem.Sameet Mehta (Ph.D.),
Visiting Fellow,
National Cancer Insitute,
Bethesda,
US.Comment
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Love this - good data definitely starts from good input, and poor input can only give relatively poor data. I particularly like the mention of Nanodrop/absorbance based methods for quantification. It's such a toss up if you'll get an accurate reading or what amounts to a randomly generated number, and a lot of library/sequencing related issues can be traced back to poor quant.07-01-2026, 11:43 AM
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